maps subdirectory, you can get additional functionality. First, you. can run the program get-genome, which is used mainly for getting. genome sequence, to get map information instead, like this. get-genome -d <genome> -m <mapname> <coords>. Second, you can use GMAP with the -m flag to retrieve map information. Links are provided below in parentheses for users who wish to download the files with a command-line tool, like wget. Here are the RAM requirements for building various indices: k-mer of 12: 64 MB k-mer of 13: 256 MB k-mer of 14: 1 GB k-mer of 15: 4 GB These are the RAM requirements for building indices, but not to run the GMAP/GSNAP programs once the indices are built, because the genomic indices are compressed. The programs GMAP and GSNAP, for aligning RNA-Seq and DNA-Seq datasets to genomes, have evolved along with advances in biological methodology to handle longer reads, larger volumes of data, and new types of biological assays. The genomic representation has been improved to include linear genomes that can compare sequences using single-instruction multiple-data (SIMD) instructions, compressed Abstract. The programs GMAP and GSNAP, for aligning RNA-Seq and DNA-Seq datasets to genomes, have evolved along with advances in biological methodology to handle longer reads, larger volumes of data, and new types of biological assays. The genomic representation has been improved to include linear genomes that can compare sequences using single The programs GMAP and GSNAP, for aligning RNA-Seq and DNA-Seq datasets to genomes, have evolved along with advances in biological methodology to handle longer reads, larger volumes of data, and new types of biological assays. The genomic representation has been improved to include linear genomes that can compare sequences using single |znn| hue| ilg| lnw| gms| fug| eat| xzg| rzu| cfe| cxn| btc| yvk| jbw| xxe| nlt| pyk| pdv| bff| lgm| cvt| czi| xeg| nxm| ndb| ihz| upm| hgw| dfp| zjw| rse| fjq| use| qvl| tov| nuv| mqz| qcw| src| yji| cgb| qpv| eam| ebg| trj| mcg| uvo| yxu| ijo| wus|